R agents

Interface to ChatGPT from R

gpttools extends gptstudio for package development to help you document code, write tests, or even explain code

An R package-wrapper around OpenAI API

A complete toolkit for connecting R and LLMs

A structured Claude Code workflow for empirically replicating published research using UK Biobank (UKB) data, created by Chen Zhu 朱晨 | 遗传社科研究.

A collection of agent skills for BioPharma use cases GSDBench Intake https://rconsortium.github.io/pharma-skills/gsdbench-intake/

villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.

Survival analysis in health economic evaluation Contains a suite of functions to systematise the workflow involving survival analysis in health economic evaluation. survHE can fit a large range of survival models using both a frequentist approach (by calling the R package flexsurv) and a Bayesian perspective.

[Experimental] A coding agent for RStudio

Lightweight Framework for Building Multi-Agents LLM Sequential Orchestration Processes

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

Simple plugin to instantly transform broken English into working code and analysis in RStudio using Open AI's API

rdocdump: Dump ‘R’ Package Source, Documentation, and Vignettes into One File

AI screening tools in R for systematic reviewing

censuschat aims to let you ask questions about U.S. Census data in natural language. More specifically, a large language model takes queries about Census data and translates them into tidycensus R code. It uses the ellmer R package under the hood.

GenAI harnesses the power of advanced models like GPT-4 and Gemini Pro to serve as versatile coding and writing assistants for users in both R and, soon, Python. This toolbox empowers users with a range of capabilities, including text generation, code optimization, natural language processing, chat assistance, and image interpretation.

openapi provides an easy-to-use interface for interacting with the OpenAI API in R, allowing users to generate responses to natural language prompts and process them for various tasks.

A dashboard that lets you query the Gapminder dataset using natural language. Powered by Gemini 2.5 Flash.

Chatbot developed in R Shiny using 2 KNN models for classification with Caret library.

AI Forecasting tool for Time-Series and Non-time series data

AI analysis R package for generating comprehensive scientific reports and plots using OpenAI's API.

raix = R + AI + eXperiment — AI coding assistant for RStudio. Chat, explain, debug, generate code with any model (OpenAI, Ollama, Claude, Groq, Mistral, DeepSeek + more).

Unified ingestion tool for Google's Open Knowledge Format (OKF): validate, load into a portable DuckDB catalog, and semantically search bundles — from R or Python.

R Package: Pairwise Comparison Tools for LLM-Based Writing Evaluation

An MCP server that exposes the fganalysis R package to agentic workflows. The server is designed for tools such as ClawBio that need structured access to FinnGen lab, drug-purchase, drug-response, BLUP-slope, median pre-drug phenotype, and ATC-code-mapping workflows.

A lightweight R Shiny app for reviewing a gene or variant across ClinVar, gnomAD, Ensembl, Open Targets, and more, with an optional AI assistant.

A Quarto gallery of Shiny apps and packages for computational biology